Valentina Pedoia, PhD
Associate Professor in Radiology
Associate Adjunct Professor
Biography
Valentina Pedoia, PhD, holds a double appointment as Associate Professor in the Radiology and Biomedical Imaging Department at UCSF and Sr Director of AI/ML Computer Vision at the Altos Labs. She is a Computer Scientists by training with more than 15 years of experience in Biomedical Imaging. Her primary interest is in developing Computer Vision and Machine Learning algorithms to transform biomedical imaging into knowledge. Her research spans imaging scale and modalities: from understanding fundamental mechanistic phenomena with microscopy to in vivo Magnetic Resonance Imaging, with the common aim of exploring imaging biomarkers of aging. She has great interest in the clinical translation of novel technology, as such she is invested in making all imaging modalities more efficient and effective by boosting speed in acquisition and processing.
Education
Ph.D, 2013 - Medical Computer Science, Insubria University, Italy
M.Sc, 2008 - Telecommunication Engineering, Signal Processing Division, Politecnico of Milano, Italy
B.S, 2005 - Telecommunication Engineering, Signal Processing Division, Politecnico of Milano, Italy
Honors and Awards
Magna Cum Lode Abstract; ISMRM 23th Annual Meeting and Exhibition, International Society of Magn. Reson. in Medicine, 2015
Best Poster at the Musculoskeletal MR study group, ISMRM 23th Annual Meeting and Exhibition, International Society of Magn. Reson. in Medicine, 2015
Highly ranked abstract at the ISMRM 8th International Workshop on imaging based measures of OA, International Society of Magn. Reson. in Medicine, 2015
Travel Stipend Award at the ISMRM 8th International Workshop on imaging based measures of OA, International Society of Magn. Reson. in Medicine, 2015
9th Annual Surbeck Young Investigator's Award, Margaret Hart Surbeck Laboratory of Advanced Imaging, 2015
Bruce Hasegawa Award, UCSF, 2015
Research Grants in Women’s Health, SCOR (Principal Investigator), UCSF and UC Davis, 2015
Publications
Bailey KN, Gao KT, Halvorson RT, Oeding JF, Majumdar S, Pedoia V, Lansdown DA. Association Between Tibiofemoral Bone Shape Features and Retears After Anterior Cruciate Ligament Reconstruction. Orthop J Sports Med. 2024 Nov; 12(11):23259671241289096.
Thahakoya R, Roach KE, Han M, Bhattacharjee R, Jiang F, Luitjens J, Bahroos E, Pedoia V, Souza RB, Majumdar S. Association of cartilage T1? and T2 relaxation time measurement with hip osteoarthritis progression: A 5-year longitudinal study using voxel-based relaxometry and Z-score normalization. Osteoarthr Cartil Open. 2024 Dec; 6(4):100538.
Bhattacharjee R, Hammond E, Chotigar N, Akkaya Z, Jiang F, Bahroos E, Han M, Behr S, Bucknor MD, Souza RB, Pedoia V, Majumdar S. The relationships between patellofemoral bone remodeling, cartilage composition, and vertical loading rate: PET/MRI in isolated patellofemoral osteoarthritis. Osteoarthritis Cartilage. 2024 Dec; 32(12):1591-1600.
Ellison J, Caliva F, Damasceno P, Luks TL, LaFontaine M, Cluceru J, Kemisetti A, Li Y, Molinaro AM, Pedoia V, Villanueva-Meyer JE, Lupo JM. Improving the Generalizability of Deep Learning for T2-Lesion Segmentation of Gliomas in the Post-Treatment Setting. Bioengineering (Basel). 2024 May 16; 11(5).
Roach KE, Bird AL, Pedoia V, Majumdar S, Souza RB. Automated evaluation of hip abductor muscle quality and size in hip osteoarthritis: Localized muscle regions are strongly associated with overall muscle quality. Magn Reson Imaging. 2024 Sep; 111:237-245.
Ozhinsky E, Liu F, Pedoia V, Majumdar S. Machine learning-based automated scan prescription of lumbar spine MRI acquisitions. Magn Reson Imaging. 2024 Jul; 110:29-34.
Tong MW, Tolpadi AA, Bhattacharjee R, Han M, Majumdar S, Pedoia V. Synthetic Knee MRI T1p Maps as an Avenue for Clinical Translation of Quantitative Osteoarthritis Biomarkers. Bioengineering (Basel). 2023 Dec 24; 11(1).
Nosrat C, Gao KT, Bhattacharjee R, Pedoia V, Koff MF, Gold GE, Potter HG, Majumdar S. Multiparametric MRI of Knees in Collegiate Basketball Players: Associations With Morphological Abnormalities and Functional Deficits. Orthop J Sports Med. 2023 Dec; 11(12):23259671231216490.
Ornowski J, Dziesinski L, Hess M, Krug R, Fortin M, Torres-Espin A, Majumdar S, Pedoia V, Bonnheim NB, Bailey JF. Thresholding approaches for estimating paraspinal muscle fat infiltration using T1- and T2-weighted MRI: Comparative analysis using water-fat MRI. JOR Spine. 2024 Mar; 7(1):e1301.
Davidson EJ, Figgie C, Nguyen J, Pedoia V, Majumdar S, Potter HG, Koff MF. Chondral Injury Associated With ACL Injury: Assessing Progressive Chondral Degeneration With Morphologic and Quantitative MRI Techniques. Sports Health. 2024 Sep-Oct; 16(5):722-734.
Gao KT, Xie E, Chen V, Iriondo C, Calivà F, Souza RB, Majumdar S, Pedoia V. Large-Scale Analysis of Meniscus Morphology as Risk Factor for Knee Osteoarthritis. Arthritis Rheumatol. 2023 11; 75(11):1958-1968.
Bhattacharjee R, Thahakoya R, Luitjens J, Han M, Roach KE, Jiang F, Souza RB, Pedoia V, Majumdar S. Effects of T1p Characteristics of Load-Bearing Hip Cartilage on Bilateral Knee Patellar Cartilage Subregions: Subjects With None to Moderate Radiographic Hip Osteoarthritis. J Magn Reson Imaging. 2024 Jul; 60(1):186-202.
Vassileva MT, Kim JS, Valle AGD, Harris MD, Pedoia V, Lattanzi R, Kraus VB, Pascual-Garrido C, Bostrom MP. Arthritis Foundation/HSS Workshop on Hip Osteoarthritis, Part 2: Detecting Hips at Risk: Early Biomechanical and Structural Mechanisms. HSS J. 2023 Nov; 19(4):428-433.
Joseph GB, Takakusagi M, Arcilla G, Lynch JA, Pedoia V, Majumdar S, Lane NE, Nevitt MC, McCulloch CE, Link TM. Associations between weight change, knee subcutaneous fat and cartilage thickness in overweight and obese individuals: 4-Year data from the osteoarthritis initiative. Osteoarthritis Cartilage. 2023 11; 31(11):1515-1523.
Hess M, Allaire B, Gao KT, Tibrewala R, Inamdar G, Bharadwaj U, Chin C, Pedoia V, Bouxsein M, Anderson D, Majumdar S. Deep Learning for Multi-Tissue Segmentation and Fully Automatic Personalized Biomechanical Models from BACPAC Clinical Lumbar Spine MRI. Pain Med. 2023 08 04; 24(Suppl 1):S139-S148.
Han M, Bahroos E, Hess ME, Chin CT, Gao KT, Shin DD, Villanueva-Meyer JE, Link TM, Pedoia V, Majumdar S. Technology and Tool Development for BACPAC: Qualitative and Quantitative Analysis of Accelerated Lumbar Spine MRI with Deep-Learning Based Image Reconstruction at 3T. Pain Med. 2023 08 04; 24(Suppl 1):S149-S159.
Mauck MC, Lotz J, Psioda MA, Carey TS, Clauw DJ, Majumdar S, Marras WS, Vo N, Aylward A, Hoffmeyer A, Zheng P, Ivanova A, McCumber M, Carson C, Anstrom KJ, Bowden AE, Dalton D, Derr L, Dufour J, Fields AJ, Fritz J, Hassett AL, Harte SE, Hue TF, Krug R, Loggia ML, Mageswaran P, McLean SA, Mitchell UH, O'Neill C, Pedoia V, Quirk DA, Rhon DI, Rieke V, Shah L, Sowa G, Spiegel B, Wasan AD, Wey HM, LaVange L. The Back Pain Consortium (BACPAC) Research Program: Structure, Research Priorities, and Methods. Pain Med. 2023 08 04; 24(Suppl 1):S3-S12.
Sneag DB, Abel F, Potter HG, Fritz J, Koff MF, Chung CB, Pedoia V, Tan ET. MRI Advancements in Musculoskeletal Clinical and Research Practice. Radiology. 2023 08; 308(2):e230531.
Cummings J, Gao K, Chen V, Morales Martinez A, Iriondo C, Caliva F, Majumdar S, Pedoia V. The knee connectome: A novel tool for studying spatiotemporal change in cartilage thickness. J Orthop Res. 2024 01; 42(1):43-53.
Wong V, Calivá F, Su F, Pedoia V, Lansdown D. Comparing bone shape models from deep learning processing of magnetic resonance imaging to computed tomography-based models. JSES Int. 2023 Sep; 7(5):861-867.
Liao TC, Bird A, Samaan MA, Pedoia V, Majumdar S, Souza RB. Persistent underloading of patellofemoral joint following hamstring autograft ACL reconstruction is associated with cartilage health. Osteoarthritis Cartilage. 2023 09; 31(9):1265-1273.
Tolpadi AA, Luitjens J, Gassert FG, Li X, Link TM, Majumdar S, Pedoia V. Synthetic Inflammation Imaging with PatchGAN Deep Learning Networks. Bioengineering (Basel). 2023 Apr 25; 10(5).
Bharadwaj UU, Christine M, Li S, Chou D, Pedoia V, Link TM, Chin CT, Majumdar S. Deep learning for automated, interpretable classification of lumbar spinal stenosis and facet arthropathy from axial MRI. Eur Radiol. 2023 May; 33(5):3435-3443.
Tolpadi AA, Bharadwaj U, Gao KT, Bhattacharjee R, Gassert FG, Luitjens J, Giesler P, Morshuis JN, Fischer P, Hein M, Baumgartner CF, Razumov A, Dylov D, Lohuizen QV, Fransen SJ, Zhang X, Tibrewala R, de Moura HL, Liu K, Zibetti MVW, Regatte R, Majumdar S, Pedoia V. K2S Challenge: From Undersampled K-Space to Automatic Segmentation. Bioengineering (Basel). 2023 Feb 18; 10(2).
Dam EB, Desai AD, Deniz CM, Rajamohan HR, Regatte R, Iriondo C, Pedoia V, Majumdar S, Perslev M, Igel C, Pai A, Gaj S, Yang M, Nakamura K, Li X, Maqbool H, Irmakci I, Song SE, Bagci U, Hargreaves B, Gold G, Chaudhari A. Towards Automatic Cartilage Quantification in Clinical Trials - Continuing from the 2019 IWOAI Knee Segmentation Challenge. Osteoarthr Imaging. 2023 Mar; 3(1).
De Oliveira Silva D, Johnston RTR, Mentiplay BF, Haberfield MJ, Culvenor AG, Bruder AM, Semciw AI, Girdwood M, Pappalardo PJ, Briggs C, West TJ, Hill JP, Patterson BE, Barton CJ, Sritharan P, Alexander JL, Carey DL, Schache AG, Souza RB, Pedoia V, Oei EH, Warden SJ, Telles GF, King MG, Hedger MP, Hulett M, Crossley KM. Trajectory of knee health in runners with and without heightened osteoarthritis risk: the TRAIL prospective cohort study protocol. BMJ Open. 2023 02 09; 13(2):e068040.
Joseph GB, McCulloch CE, Nevitt MC, Lynch J, Lane NE, Pedoia V, Majumdar S, Link TM. The effect of interactions between BMI and sustained depressive symptoms on knee osteoarthritis over 4 years: data from the osteoarthritis initiative. BMC Musculoskelet Disord. 2023 Jan 12; 24(1):27.
Namiri NK, Càliva F, Martinez AM, Pedoia V, Lansdown DA. A More Posterior Tibial Tubercle (Decreased Sagittal Tibial Tubercle-Trochlear Groove Distance) Is Significantly Associated With Patellofemoral Joint Degenerative Cartilage Change: A Deep Learning Analysis. Arthroscopy. 2023 06; 39(6):1493-1501.e2.
Tolpadi AA, Han M, Calivà F, Pedoia V, Majumdar S. Region of interest-specific loss functions improve T2 quantification with ultrafast T2 mapping MRI sequences in knee, hip and lumbar spine. Sci Rep. 2022 12 23; 12(1):22208.
Lee JJ, Namiri NK, Astuto B, Link TM, Majumdar S, Pedoia V. Personalized Risk Model and Leveraging of Magnetic Resonance Imaging-Based Structural Phenotypes and Clinical Factors to Predict Incidence of Radiographic Osteoarthritis. Arthritis Care Res (Hoboken). 2023 03; 75(3):501-508.
Shah R, Astuto Arouche Nunes B, Gleason T, Fletcher W, Banaga J, Sweetwood K, Ye A, Patel R, McGill K, Link T, Crane J, Pedoia V, Majumdar S. Utilizing a Digital Swarm Intelligence Platform to Improve Consensus Among Radiologists and Exploring Its Applications. J Digit Imaging. 2023 04; 36(2):401-413.
Xie D, Tanaka M, Pedoia V, Li AK, Facchetti L, Neumann J, Lartey R, Souza RB, Link TM, Benjamin Ma C, Li X. Baseline cartilage T1ρ and T2 predicted patellofemoral joint cartilage lesion progression and patient-reported outcomes after ACL reconstruction. J Orthop Res. 2023 06; 41(6):1310-1319.
Hirvasniemi J, Runhaar J, van der Heijden RA, Zokaeinikoo M, Yang M, Li X, Tan J, Rajamohan HR, Zhou Y, Deniz CM, Caliva F, Iriondo C, Lee JJ, Liu F, Martinez AM, Namiri N, Pedoia V, Panfilov E, Bayramoglu N, Nguyen HH, Nieminen MT, Saarakkala S, Tiulpin A, Lin E, Li A, Li V, Dam EB, Chaudhari AS, Kijowski R, Bierma-Zeinstra S, Oei EHG, Klein S. The KNee OsteoArthritis Prediction (KNOAP2020) challenge: An image analysis challenge to predict incident symptomatic radiographic knee osteoarthritis from MRI and X-ray images. Osteoarthritis Cartilage. 2023 01; 31(1):115-125.
Bharadwaj UU, Ben-Natan AR, Huang J, Pedoia V, Chou D, Majumdar S, Link TM, Chin CT. Evaluation of 2 Novel Ratio-Based Metrics for Lumbar Spinal Stenosis. AJNR Am J Neuroradiol. 2022 10; 43(10):1530-1538.
Roach KE, Souza RB, Majumdar S, Pedoia V. Local Patterns in 2-Year T1ρ and T2 Changes of Hip Cartilage Are Related to Sex and Functional Data: A Prospective Evaluation on Hip Osteoarthritis Participants. J Magn Reson Imaging. 2023 04; 57(4):1042-1053.
Liao TC, Pedoia V, Link TM, Majumdar S, Souza RB. Association of patella alignment with cartilage relaxation times and self-reported symptoms in individuals with patellofemoral degeneration. J Orthop Res. 2023 03; 41(3):562-569.
Gao KT, Tibrewala R, Hess M, Bharadwaj UU, Inamdar G, Link TM, Chin CT, Pedoia V, Majumdar S. Automatic detection and voxel-wise mapping of lumbar spine Modic changes with deep learning. JOR Spine. 2022 Jun; 5(2):e1204.
Cluceru J, Interian Y, Phillips JJ, Molinaro AM, Luks TL, Alcaide-Leon P, Olson MP, Nair D, LaFontaine M, Shai A, Chunduru P, Pedoia V, Villanueva-Meyer JE, Chang SM, Lupo JM. Improving the noninvasive classification of glioma genetic subtype with deep learning and diffusion-weighted imaging. Neuro Oncol. 2022 04 01; 24(4):639-652.
Binvignat M, Pedoia V, Butte AJ, Louati K, Klatzmann D, Berenbaum F, Mariotti-Ferrandiz E, Sellam J. Use of machine learning in osteoarthritis research: a systematic literature review. RMD Open. 2022 03; 8(1).
Salesky MA, Zhang AL, Ma CB, Feeley BT, Pedoia V, Lansdown DA. The Use of Multiple Imaging Studies Before Shoulder Stabilization Surgery Is Increasing. Arthrosc Sports Med Rehabil. 2022 Jun; 4(3):e919-e925.
Calivá F, Kamat S, Morales Martinez A, Majumdar S, Pedoia V. Surface spherical encoding and contrastive learning for virtual bone shape aging. Med Image Anal. 2022 04; 77:102388.
Chaudhari GR, Chillakuru YR, Chen TL, Pedoia V, Vu TH, Hess CP, Seo Y, Sohn JH. Clinical language search algorithm from free-text: facilitating appropriate imaging. BMC Med Imaging. 2022 02 04; 22(1):18.
Samaan MA, Pedoia V, Tanaka MS, Souza RB, Benjamin Ma C, Li X. Hip-Knee Joint Coordination Patterns are Associated With Patellofemoral Joint Cartilage Composition in Patients With Anterior Cruciate Ligament Reconstruction. J Appl Biomech. 2022 02 01; 38(1):20-28.
Link TM, Pedoia V. Using AI to Improve Radiographic Fracture Detection. Radiology. 2022 03; 302(3):637-638.
Bongbong DN, Oeding JF, Ma CB, Pedoia V, Lansdown DA. Posterior Tibial Slope, Notch Width, Condylar Morphology, Trochlear Inclination, and Tibiofemoral Mismatch Predict Outcomes Following Anterior Cruciate Ligament Reconstruction. Arthroscopy. 2022 05; 38(5):1689-1704.e1.
Pedoia V, Caliva F, Kazakia G, Burghardt AJ, Majumdar S. Augmenting Osteoporosis Imaging with Machine Learning. Curr Osteoporos Rep. 2021 12; 19(6):699-709.
Calivà F, Namiri NK, Dubreuil M, Pedoia V, Ozhinsky E, Majumdar S. Studying osteoarthritis with artificial intelligence applied to magnetic resonance imaging. Nat Rev Rheumatol. 2022 02; 18(2):112-121.
Iriondo C, Mehany S, Shah R, Bharadwaj U, Bahroos E, Chin C, Diab M, Pedoia V, Majumdar S. Institution-wide shape analysis of 3D spinal curvature and global alignment parameters. J Orthop Res. 2022 08; 40(8):1896-1908.
Morales AG, Lee JJ, Caliva F, Iriondo C, Liu F, Majumdar S, Pedoia V. Uncovering associations between data-driven learned qMRI biomarkers and chronic pain. Sci Rep. 2021 11 09; 11(1):21989.
Joseph GB, McCulloch CE, Sohn JH, Pedoia V, Majumdar S, Link TM. AI MSK clinical applications: cartilage and osteoarthritis. Skeletal Radiol. 2022 Feb; 51(2):331-343.
Han M, Tibrewala R, Bahroos E, Pedoia V, Majumdar S. Magnetization-prepared spoiled gradient-echo snapshot imaging for efficient measurement of R2 -R1ρ in knee cartilage. Magn Reson Med. 2022 02; 87(2):733-745.
Liao TC, Pedoia V, Majumdar S, Souza RB. Longitudinal Changes of Patellar Alignment Before and After Anterior Cruciate Ligament Reconstruction With Hamstring Autograft. Am J Sports Med. 2021 09; 49(11):2908-2915.
Namiri NK, Lee J, Astuto B, Liu F, Shah R, Majumdar S, Pedoia V. Deep learning for large scale MRI-based morphological phenotyping of osteoarthritis. Sci Rep. 2021 05 25; 11(1):10915.
Astuto B, Flament I, Namiri NK, Shah R, Bharadwaj U, Link TM, Bucknor MD, Pedoia V, Majumdar S. Erratum: Automatic Deep Learning-assisted Detection and Grading of Abnormalities in Knee MRI Studies. Radiol Artif Intell. 2021 May; 3(3):e219001.
Joseph GB, Ramezanpour S, McCulloch CE, Nevitt MC, Lynch J, Lane NE, Pedoia V, Majumdar S, Link TM. Weight Cycling and Knee Joint Degeneration in Individuals with Overweight or Obesity: Four-Year Magnetic Resonance Imaging Data from the Osteoarthritis Initiative. Obesity (Silver Spring). 2021 05; 29(5):909-918.
Desai AD, Caliva F, Iriondo C, Mortazi A, Jambawalikar S, Bagci U, Perslev M, Igel C, Dam EB, Gaj S, Yang M, Li X, Deniz CM, Juras V, Regatte R, Gold GE, Hargreaves BA, Pedoia V, Chaudhari AS, IWOAI Segmentation Challenge Writing Group. The International Workshop on Osteoarthritis Imaging Knee MRI Segmentation Challenge: A Multi-Institute Evaluation and Analysis Framework on a Standardized Dataset. Radiol Artif Intell. 2021 May; 3(3):e200078.
Tibrewala R, Pedoia V, Lee J, Kinnunen C, Popovic T, Zhang AL, Link TM, Souza RB, Majumdar S. Automatic hip abductor muscle fat fraction estimation and association with early OA cartilage degeneration biomarkers. J Orthop Res. 2021 11; 39(11):2376-2387.
Astuto B, Flament I, K Namiri N, Shah R, Bharadwaj U, M Link T, D Bucknor M, Pedoia V, Majumdar S. Automatic Deep Learning-assisted Detection and Grading of Abnormalities in Knee MRI Studies. Radiol Artif Intell. 2021 May; 3(3):e200165.
Roach KE, Pedoia V, Lee JJ, Popovic T, Link TM, Majumdar S, Souza RB. Multivariate functional principal component analysis identifies waveform features of gait biomechanics related to early-to-moderate hip osteoarthritis. J Orthop Res. 2021 08; 39(8):1722-1731.
Iriondo C, Liu F, Calivà F, Kamat S, Majumdar S, Pedoia V. Towards understanding mechanistic subgroups of osteoarthritis: 8-year cartilage thickness trajectory analysis. J Orthop Res. 2021 06; 39(6):1305-1317.
Liao TC, Jergas H, Tibrewala R, Bahroos E, Link TM, Majumdar S, Souza RB, Pedoia V. Longitudinal analysis of the contribution of 3D patella and trochlear bone shape on patellofemoral joint osteoarthritic features. J Orthop Res. 2021 03; 39(3):506-515.
Gao KT, Pedoia V, Young KA, Kogan F, Koff MF, Gold GE, Potter HG, Majumdar S. Multiparametric MRI characterization of knee articular cartilage and subchondral bone shape in collegiate basketball players. J Orthop Res. 2021 07; 39(7):1512-1522.
Lansdown DA, Pedoia V. Editorial Commentary: Can We Evaluate Glenoid Bone With Magnetic Resonance Imaging? Yes, If You Have the Right Sequence. Arthroscopy. 2020 09; 36(9):2401-2402.
Namiri NK, Flament I, Astuto B, Shah R, Tibrewala R, Caliva F, Link TM, Pedoia V, Majumdar S. Deep Learning for Hierarchical Severity Staging of Anterior Cruciate Ligament Injuries from MRI. Radiol Artif Intell. 2020 Jul 29; 2(4):e190207.
Razmjoo A, Caliva F, Lee J, Liu F, Joseph GB, Link TM, Majumdar S, Pedoia V. T2 analysis of the entire osteoarthritis initiative dataset. J Orthop Res. 2021 01; 39(1):74-85.
Calivá, F.
Shah, R.
Bharadwaj, U.
Majumdar, S.
Larson, P
Pedoia V.. Medical Imaging with Deep Learning. Breaking Speed Limits with Simultaneous Ultra-Fast MRI Reconstruction and Tissue Segmentation. 2020; 1(1):1-17.
Cheng, V.
Calivá, F.
Shah, R.
Han, M.
Majumdar, S.
Pedoia, V.. Medical Imaging with Deep Learning. Addressing The False Negative Problem of MRI Reconstruction Networks by Adversarial Attacks and Robust Training. 2020; 1(1):1-15.
Liao TC, Martinez AGM, Pedoia V, Ma BC, Li X, Link TM, Majumdar S, Souza RB. Patellar Malalignment Is Associated With Patellofemoral Lesions and Cartilage Relaxation Times After Hamstring Autograft Anterior Cruciate Ligament Reconstruction. Am J Sports Med. 2020 07; 48(9):2242-2251.
Shah RF, Bini SA, Martinez AM, Pedoia V, Vail TP. Incremental inputs improve the automated detection of implant loosening using machine-learning algorithms. Bone Joint J. 2020 Jun; 102-B(6_Supple_A):101-106.
Li AK, Ochoa JK, Pedoia V, Amano K, Souza RB, Li X, Ma CB. Altered tibiofemoral position following ACL reconstruction is associated with cartilage matrix changes: A voxel-based relaxometry analysis. J Orthop Res. 2020 11; 38(11):2454-2463.
Tibrewala R, Ozhinsky E, Shah R, Flament I, Crossley K, Srinivasan R, Souza R, Link TM, Pedoia V, Majumdar S. Computer-Aided Detection AI Reduces Interreader Variability in Grading Hip Abnormalities With MRI. J Magn Reson Imaging. 2020 10; 52(4):1163-1172.
Tolpadi AA, Lee JJ, Pedoia V, Majumdar S. Deep Learning Predicts Total Knee Replacement from Magnetic Resonance Images. Sci Rep. 2020 04 14; 10(1):6371.
Morales Martinez A, Caliva F, Flament I, Liu F, Lee J, Cao P, Shah R, Majumdar S, Pedoia V. Learning osteoarthritis imaging biomarkers from bone surface spherical encoding. Magn Reson Med. 2020 10; 84(4):2190-2203.
Krogue JD, Cheng KV, Hwang KM, Toogood P, Meinberg EG, Geiger EJ, Zaid M, McGill KC, Patel R, Sohn JH, Wright A, Darger BF, Padrez KA, Ozhinsky E, Majumdar S, Pedoia V. Automatic Hip Fracture Identification and Functional Subclassification with Deep Learning. Radiol Artif Intell. 2020 Mar; 2(2):e190023.
Tibrewala R, Pedoia V, Bucknor M, Majumdar S. Principal Component Analysis of Simultaneous PET-MRI Reveals Patterns of Bone-Cartilage Interactions in Osteoarthritis. J Magn Reson Imaging. 2020 11; 52(5):1462-1474.
Iriondo C, Pedoia V, Majumdar S. Lumbar intervertebral disc characterization through quantitative MRI analysis: An automatic voxel-based relaxometry approach. Magn Reson Med. 2020 09; 84(3):1376-1390.
von Schacky CE, Sohn JH, Liu F, Ozhinsky E, Jungmann PM, Nardo L, Posadzy M, Foreman SC, Nevitt MC, Link TM, Pedoia V. Development and Validation of a Multitask Deep Learning Model for Severity Grading of Hip Osteoarthritis Features on Radiographs. Radiology. 2020 04; 295(1):136-145.
Zaid MB, Young NM, Pedoia V, Feeley BT, Ma CB, Lansdown DA. Radiographic shoulder parameters and their relationship to outcomes following rotator cuff repair: a systematic review. Shoulder Elbow. 2021 Aug; 13(4):371-379.
Li AK, Pedoia V, Tanaka M, Souza RB, Ma CB, Li X. Six-month post-surgical elevations in cartilage T1rho relaxation times are associated with functional performance 2 years after ACL reconstruction. J Orthop Res. 2020 05; 38(5):1132-1140.
Kijowski R, Liu F, Caliva F, Pedoia V. Deep Learning for Lesion Detection, Progression, and Prediction of Musculoskeletal Disease. J Magn Reson Imaging. 2020 12; 52(6):1607-1619.
Chaudhari AS, Kogan F, Pedoia V, Majumdar S, Gold GE, Hargreaves BA. Rapid Knee MRI Acquisition and Analysis Techniques for Imaging Osteoarthritis. J Magn Reson Imaging. 2020 11; 52(5):1321-1339.
Liao TC, Pedoia V, Neumann J, Link TM, Souza RB, Majumdar S. Extracting Voxel-Based Cartilage Relaxometry Features in Hip Osteoarthritis Subjects Using Principal Component Analysis. J Magn Reson Imaging. 2020 06; 51(6):1708-1719.
Tibrewala R, Bahroos E, Mehrabian H, Foreman SC, Link TM, Pedoia V, Majumdar S. [18 F]-Sodium Fluoride PET/MR Imaging for Bone-Cartilage Interactions in Hip Osteoarthritis: A Feasibility Study. J Orthop Res. 2019 12; 37(12):2671-2680.
Zaid MB, Young NM, Pedoia V, Feeley BT, Ma CB, Lansdown DA. Anatomic shoulder parameters and their relationship to the presence of degenerative rotator cuff tears and glenohumeral osteoarthritis: a systematic review and meta-analysis. J Shoulder Elbow Surg. 2019 Dec; 28(12):2457-2466.
Shah RF, Martinez AM, Pedoia V, Majumdar S, Vail TP, Bini SA. Variation in the Thickness of Knee Cartilage. The Use of a Novel Machine Learning Algorithm for Cartilage Segmentation of Magnetic Resonance Images. J Arthroplasty. 2019 10; 34(10):2210-2215.
Norman B, Pedoia V, Noworolski A, Link TM, Majumdar S. Applying Densely Connected Convolutional Neural Networks for Staging Osteoarthritis Severity from Plain Radiographs. J Digit Imaging. 2019 06; 32(3):471-477.
Pedoia V, Lee J, Norman B, Link TM, Majumdar S. Diagnosing osteoarthritis from T2 maps using deep learning: an analysis of the entire Osteoarthritis Initiative baseline cohort. Osteoarthritis Cartilage. 2019 07; 27(7):1002-1010.
Zhong Q, Pedoia V, Tanaka M, Neumann J, Link TM, Ma B, Lin J, Li X. 3D bone-shape changes and their correlations with cartilage T1ρ and T2 relaxation times and patient-reported outcomes over 3-years after ACL reconstruction. Osteoarthritis Cartilage. 2019 06; 27(6):915-921.
Shimizu T, Cruz A, Tanaka M, Mamoto K, Pedoia V, Burghardt AJ, Heilmeier U, Link TM, Graf J, Imboden JB, Li X. Structural Changes over a Short Period Are Associated with Functional Assessments in Rheumatoid Arthritis. J Rheumatol. 2019 07; 46(7):676-684.
Markes AR, Knox J, Zhong Q, Pedoia V, Li X, Ma CB. An Abnormal Tibial Position Is Associated With Alterations in the Meniscal Matrix: A 3-Year Longitudinal Study After Anterior Cruciate Ligament Reconstruction. Orthop J Sports Med. 2019 Jan; 7(1):2325967118820057.
Samaan MA, Zhang AL, Popovic T, Pedoia V, Majumdar S, Souza RB. Hip joint muscle forces during gait in patients with femoroacetabular impingement syndrome are associated with patient reported outcomes and cartilage composition. J Biomech. 2019 02 14; 84:138-146.
Shimizu T, Samaan MA, Tanaka MS, Pedoia V, Souza RB, Li X, Ma CB. Abnormal Biomechanics at 6 Months Are Associated With Cartilage Degeneration at 3 Years After Anterior Cruciate Ligament Reconstruction. Arthroscopy. 2019 02; 35(2):511-520.
Pedoia V, Majumdar S. Translation of morphological and functional musculoskeletal imaging. J Orthop Res. 2019 01; 37(1):23-34.
Inamdar G, Pedoia V, Rossi-Devries J, Samaan MA, Link TM, Souza RB, Majumdar S. MR study of longitudinal variations in proximal femur 3D morphological shape and associations with cartilage health in hip osteoarthritis. J Orthop Res. 2019 01; 37(1):161-170.
Pedoia V, Norman B, Mehany SN, Bucknor MD, Link TM, Majumdar S. 3D convolutional neural networks for detection and severity staging of meniscus and PFJ cartilage morphological degenerative changes in osteoarthritis and anterior cruciate ligament subjects. J Magn Reson Imaging. 2019 02; 49(2):400-410.
Chen E, Amano K, Pedoia V, Souza RB, Ma CB, Li X. Longitudinal analysis of tibiofemoral cartilage contact area and position in ACL reconstructed patients. J Orthop Res. 2018 10; 36(10):2718-2727.
Rossi-deVries J, Pedoia V, Samaan MA, Ferguson AR, Souza RB, Majumdar S. Using multidimensional topological data analysis to identify traits of hip osteoarthritis. J Magn Reson Imaging. 2018 10; 48(4):1046-1058.
Teng HL, Pedoia V, Link TM, Majumdar S, Souza RB. Local associations between knee cartilage T1ρ and T2 relaxation times and patellofemoral joint stress during walking: A voxel-based relaxometry analysis. Knee. 2018 Jun; 25(3):406-416.
Norman B, Pedoia V, Majumdar S. Use of 2D U-Net Convolutional Neural Networks for Automated Cartilage and Meniscus Segmentation of Knee MR Imaging Data to Determine Relaxometry and Morphometry. Radiology. 2018 07; 288(1):177-185.
Knox J, Pedoia V, Wang A, Tanaka M, Joseph GB, Neumann J, Link TM, Li X, Ma CB. Longitudinal changes in MR T1ρ/T2 signal of meniscus and its association with cartilage T1p/T2 in ACL-injured patients. Osteoarthritis Cartilage. 2018 05; 26(5):689-696.
Kumar D, Su F, Wu D, Pedoia V, Heitkamp L, Ma CB, Souza RB, Li X. Frontal Plane Knee Mechanics and Early Cartilage Degeneration in People With Anterior Cruciate Ligament Reconstruction: A Longitudinal Study. Am J Sports Med. 2018 02; 46(2):378-387.
Lansdown DA, Pedoia V, Zaid M, Amano K, Souza RB, Li X, Ma CB. Variations in Knee Kinematics After ACL Injury and After Reconstruction Are Correlated With Bone Shape Differences. Clin Orthop Relat Res. 2017 Oct; 475(10):2427-2435.
Teng HL, Wu D, Su F, Pedoia V, Souza RB, Ma CB, Li X. Gait Characteristics Associated With a Greater Increase in Medial Knee Cartilage T1ρ and T2 Relaxation Times in Patients Undergoing Anterior Cruciate Ligament Reconstruction. Am J Sports Med. 2017 Dec; 45(14):3262-3271.
Samaan MA, Pedoia V, Zhang AL, Gallo MC, Link TM, Souza RB, Majumdar S. A novel mr-based method for detection of cartilage delamination in femoroacetabular impingement patients. J Orthop Res. 2018 03; 36(3):971-978.
Pedoia V, Samaan MA, Inamdar G, Gallo MC, Souza RB, Majumdar S. Study of the interactions between proximal femur 3d bone shape, cartilage health, and biomechanics in patients with hip Osteoarthritis. J Orthop Res. 2018 01; 36(1):330-341.
Pedoia V, Haefeli J, Morioka K, Teng HL, Nardo L, Souza RB, Ferguson AR, Majumdar S. MRI and biomechanics multidimensional data analysis reveals R2 -R1ρ as an early predictor of cartilage lesion progression in knee osteoarthritis. J Magn Reson Imaging. 2018 01; 47(1):78-90.
Samaan MA, Facchetti L, Pedoia V, Tanaka MS, Link TM, Souza RB, Ma CB, Li X. Cyclops lesions are associated with altered gait patterns and medial knee joint cartilage degeneration at 1 year after ACL-reconstruction. J Orthop Res. 2017 10; 35(10):2275-2281.
Amano K, Li AK, Pedoia V, Koff MF, Krych AJ, Link TM, Potter H, Rodeo S, Li X, Ma CB, Majumdar S, Arthritis Foundation-ACL Consortium. Effects of Surgical Factors on Cartilage Can Be Detected Using Quantitative Magnetic Resonance Imaging After Anterior Cruciate Ligament Reconstruction. Am J Sports Med. 2017 Apr; 45(5):1075-1084.
Gong J, Pedoia V, Facchetti L, Link TM, Ma CB, Li X. Bone marrow edema-like lesions (BMELs) are associated with higher T1ρ and T2 values of cartilage in anterior cruciate ligament (ACL)-reconstructed knees: a longitudinal study. Quant Imaging Med Surg. 2016 Dec; 6(6):661-670.
Pedoia V, Russell C, Randolph A, Li X, Majumdar S, AF-ACL Consortium. Principal component analysis-T1ρ voxel based relaxometry of the articular cartilage: a comparison of biochemical patterns in osteoarthritis and anterior cruciate ligament subjects. Quant Imaging Med Surg. 2016 Dec; 6(6):623-633.
Russell C, Pedoia V, Souza RB, Majumdar S. Cross-sectional and longitudinal study of the impact of posterior meniscus horn lesions on adjacent cartilage composition, patient-reported outcomes and gait biomechanics in subjects without radiographic osteoarthritis. Osteoarthritis Cartilage. 2017 05; 25(5):708-717.
Ku E, Pedoia V, Tanaka M, Heilmeier U, Imboden J, Graf J, Link T, Li X. Evaluating radiocarpal cartilage matrix changes 3-months after anti-TNF treatment for rheumatoid arthritis using MR T1ρ imaging. J Magn Reson Imaging. 2017 05; 45(5):1514-1522.
Pedoia V, Su F, Amano K, Li Q, McCulloch CE, Souza RB, Link TM, Ma BC, Li X. Analysis of the articular cartilage T1ρ and T2 relaxation times changes after ACL reconstruction in injured and contralateral knees and relationships with bone shape. J Orthop Res. 2017 03; 35(3):707-717.
Russell C, Pedoia V, Majumdar S, AF-ACL Consortium. Composite metric R2 - R1ρ (1/T2 - 1/T1ρ ) as a potential MR imaging biomarker associated with changes in pain after ACL reconstruction: A six-month follow-up. J Orthop Res. 2017 03; 35(3):718-729.
Pedoia V, Gallo MC, Souza RB, Majumdar S. Longitudinal study using voxel-based relaxometry: Association between cartilage T1ρ and T2 and patient reported outcome changes in hip osteoarthritis. J Magn Reson Imaging. 2017 05; 45(5):1523-1533.
Pandit P, Talbott JF, Pedoia V, Dillon W, Majumdar S. T1ρ and T2 -based characterization of regional variations in intervertebral discs to detect early degenerative changes. J Orthop Res. 2016 08; 34(8):1373-81.
Russell C, Pedoia V, Amano K, Potter H, Majumdar S, AF-ACL Consortium. Baseline cartilage quality is associated with voxel-based T1ρ and T2 following ACL reconstruction: A multicenter pilot study. J Orthop Res. 2017 03; 35(3):688-698.
Amano K, Pedoia V, Su F, Souza RB, Li X, Ma CB. Persistent Biomechanical Alterations After ACL Reconstruction Are Associated With Early Cartilage Matrix Changes Detected by Quantitative MR. Orthop J Sports Med. 2016 Apr; 4(4):2325967116644421.
Gallo MC, Wyatt C, Pedoia V, Kumar D, Lee S, Nardo L, Link TM, Souza RB, Majumdar S. T1ρ and T2 relaxation times are associated with progression of hip osteoarthritis. Osteoarthritis Cartilage. 2016 08; 24(8):1399-407.
Pedoia V, Majumdar S, Link TM. Segmentation of joint and musculoskeletal tissue in the study of arthritis. MAGMA. 2016 Apr; 29(2):207-21.
Su F, Pedoia V, Teng HL, Kretzschmar M, Lau BC, McCulloch CE, Link TM, Ma CB, Li X. The association between MR T1ρ and T2 of cartilage and patient-reported outcomes after ACL injury and reconstruction. Osteoarthritis Cartilage. 2016 07; 24(7):1180-9.
Savic D, Pedoia V, Seo Y, Yang J, Bucknor M, Franc BL, Majumdar S. Imaging Bone-Cartilage Interactions in Osteoarthritis Using [18F]-NaF PET-MRI. Mol Imaging. 2016 01 01; 15:1-12.
Lau BC, Thuillier DU, Pedoia V, Chen EY, Zhang Z, Feeley BT, Souza RB. Inter- and intra-rater reliability of patellofemoral kinematic and contact area quantification by fast spin echo MRI and correlation with cartilage health by quantitative T1ρ MRI. Knee. 2016 Jan; 23(1):13-9.
Wang A, Pedoia V, Su F, Abramson E, Kretzschmar M, Nardo L, Link TM, McCulloch CE, Jin C, Ma CB, Li X. MR T1ρ and T2 of meniscus after acute anterior cruciate ligament injuries. Osteoarthritis Cartilage. 2016 Apr; 24(4):631-9.
Liu J, Pedoia V, Heilmeier U, Ku E, Su F, Khanna S, Imboden J, Graf J, Link T, Li X. High-temporospatial-resolution dynamic contrast-enhanced (DCE) wrist MRI with variable-density pseudo-random circular Cartesian undersampling (CIRCUS) acquisition: evaluation of perfusion in rheumatoid arthritis patients. NMR Biomed. 2016 Jan; 29(1):15-23.
Pedoia V, Li X, Su F, Calixto N, Majumdar S. Fully automatic analysis of the knee articular cartilage T1ρ relaxation time using voxel-based relaxometry. J Magn Reson Imaging. 2016 Apr; 43(4):970-80.
Li X, Pedoia V, Kumar D, Rivoire J, Wyatt C, Lansdown D, Amano K, Okazaki N, Savic D, Koff MF, Felmlee J, Williams SL, Majumdar S. Cartilage T1ρ and T2 relaxation times: longitudinal reproducibility and variations using different coils, MR systems and sites. Osteoarthritis Cartilage. 2015 Dec; 23(12):2214-2223.
Pedoia V, Lansdown DA, Zaid M, McCulloch CE, Souza R, Ma CB, Li X. Three-dimensional MRI-based statistical shape model and application to a cohort of knees with acute ACL injury. Osteoarthritis Cartilage. 2015 Oct; 23(10):1695-703.
Zhou Y, Pandit P, Pedoia V, Rivoire J, Wang Y, Liang D, Li X, Ying L. Accelerating T1ρ cartilage imaging using compressed sensing with iterative locally adapted support detection and JSENSE. Magn Reson Med. 2016 Apr; 75(4):1617-29.
Zaid M, Lansdown D, Su F, Pedoia V, Tufts L, Rizzo S, Souza RB, Li X, Ma CB. Abnormal tibial position is correlated to early degenerative changes one year following ACL reconstruction. J Orthop Res. 2015 Jul; 33(7):1079-86.
Lansdown DA, Zaid M, Pedoia V, Subburaj K, Souza R, Benjamin C, Li X. Reproducibility measurements of three methods for calculating in vivo MR-based knee kinematics. J Magn Reson Imaging. 2015 Aug; 42(2):533-8.
Binaghi E., Pedoia V., Balbi S.. Collection and fuzzy estimation of truth labels in glial tumor segmentation studies. Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization. 2014.
Binaghi E., Pedoia V., Guglielmin M.. Snow cover thickness estimation using radial basis function networks. The Cryosphere. 2013; 3(7):841-845.
Pedoia V, Strocchi S, Colli V, Binaghi E, Conte L. Functional magnetic resonance imaging: comparison between activation maps and computation pipelines in a clinical context. Magn Reson Imaging. 2013 May; 31(4):555-66.
Pedoia V, Binaghi E. Automatic MRI 2D brain segmentation using graph searching technique. Int J Numer Method Biomed Eng. 2013 Sep; 29(9):887-904.
Lecture Notes in Computer Science - Image Analysis and Processing. Fully Automatic Brain Tumor Segmentation by using Competitive EM and Graph Cut. 2979:568-578.
