Jeffrey Rudie, MD, PhD

HS Clinical Instructor

Publications

Rudie JD, Duda J, Duong MT, Chen PH, Xie L, Kurtz R, Ware JB, Choi J, Mattay RR, Botzolakis EJ, Gee JC, Bryan RN, Cook TS, Mohan S, Nasrallah IM, Rauschecker AM. Brain MRI Deep Learning and Bayesian Inference System Augments Radiology Resident Performance. J Digit Imaging. 2021 Jun 15.
Li Y, Thompson WK, Reuter C, Nillo R, Jernigan T, Dale A, Sugrue LP, ABCD Consortium , Brown J, Dougherty RF, Rauschecker A, Rudie J, Barch DM, Calhoun V, Hagler D, Hatton S, Tanabe J, Marshall A, Sher KJ, Heeringa S, Hermosillo R, Banich MT, Squeglia L, Bjork J, Zucker R, Neale M, Herting M, Sheth C, Huber R, Reeves G, Hettema JM, Howlett KD, Cloak C, Baskin-Sommers A, Rapuano K, Gonzalez R, Karcher N, Laird A, Baker F, James R, Sowell E, Dick A, Hawes S, Sutherland M, Bagot K, Bodurka J, Breslin F, Morris A, Paulus M, Gray K, Hoffman E, Weiss S, Rajapakse N, Glantz M, Nagel B, Ewing SF, Goldstone A, Pfefferbaum A, Prouty D, Rosenberg M, Bookheimer S, Tapert S, Infante M, Jacobus J, Giedd J, Shilling P, Wade N, Uban K, Haist F, Heyser C, Palmer C, Kuperman J, Hewitt J, Cottler L, Isaiah A, Chang L, Edwards S, Ernst T, Heitzeg M, Puttler L, Sripada C, Iacono W, Luciana M, Clark D, Luna B, Schirda C, Foxe J, Freedman E, Mason M, McGlade E, Renshaw P, Yurgelun-Todd D, Albaugh M, Allgaier N, Chaarani B, Potter A, Ivanova M, Lisdahl K, Do E, Maes H, Bogdan R, Anokhin A, Dosenbach N, Glaser P, Heath A, Casey BJ, Gee D, Garavan HP, Dowling G, Brown S. Rates of Incidental Findings in Brain Magnetic Resonance Imaging in Children. JAMA Neurol. 2021 Mar 22.
Rudie JD, Weiss DA, Colby JB, Rauschecker AM, Laguna B, Braunstein S, Sugrue LP, Hess CP, Villanueva-Meyer JE. Three-dimensional U-Net Convolutional Neural Network for Detection and Segmentation of Intracranial Metastases. Radiol Artif Intell. 2021 May; 3(3):e200204.
Rudie JD, Rauschecker AM, Xie L, Wang J, Duong MT, Botzolakis EJ, Kovalovich A, Egan JM, Cook T, Bryan RN, Nasrallah IM, Mohan S, Gee JC. Subspecialty-Level Deep Gray Matter Differential Diagnoses with Deep Learning and Bayesian Networks on Clinical Brain MRI: A Pilot Study. Radiol Artif Intell. 2020 Sep; 2(5):e190146.
Rauschecker AM, Rudie JD, Xie L, Wang J, Duong MT, Botzolakis EJ, Kovalovich AM, Egan J, Cook TC, Bryan RN, Nasrallah IM, Mohan S, Gee JC. Artificial Intelligence System Approaching Neuroradiologist-level Differential Diagnosis Accuracy at Brain MRI. Radiology. 2020 06; 295(3):626-637.
Akbari H, Rathore S, Bakas S, Nasrallah MP, Shukla G, Mamourian E, Rozycki M, Bagley SJ, Rudie JD, Flanders AE, Dicker AP, Desai AS, O'Rourke DM, Brem S, Lustig R, Mohan S, Wolf RL, Bilello M, Martinez-Lage M, Davatzikos C. Histopathology-validated machine learning radiographic biomarker for noninvasive discrimination between true progression and pseudo-progression in glioblastoma. Cancer. 2020 06 01; 126(11):2625-2636.
Fathi Kazerooni A, Akbari H, Shukla G, Badve C, Rudie JD, Sako C, Rathore S, Bakas S, Pati S, Singh A, Bergman M, Ha SM, Kontos D, Nasrallah M, Bagley SJ, Lustig RA, O'Rourke DM, Sloan AE, Barnholtz-Sloan JS, Mohan S, Bilello M, Davatzikos C. Cancer Imaging Phenomics via CaPTk: Multi-Institutional Prediction of Progression-Free Survival and Pattern of Recurrence in Glioblastoma. JCO Clin Cancer Inform. 2020 03; 4:234-244.
Bryan RN, Davatzikos C, Herskovits EH, Mohan S, Rudie JD, Rauschecker AM. Medical Image Analysis: Human and Machine. Acad Radiol. 2020 01; 27(1):76-81.
Rudie JD, Weiss DA, Saluja R, Rauschecker AM, Wang J, Sugrue L, Bakas S, Colby JB. Multi-Disease Segmentation of Gliomas and White Matter Hyperintensities in the BraTS Data Using a 3D Convolutional Neural Network. Front Comput Neurosci. 2019; 13:84.
Rathore S, Akbari H, Bakas S, Pisapia JM, Shukla G, Rudie JD, Da X, Davuluri RV, Dahmane N, O'Rourke DM, Davatzikos C. Multivariate Analysis of Preoperative Magnetic Resonance Imaging Reveals Transcriptomic Classification of de novo Glioblastoma Patients. Front Comput Neurosci. 2019; 13:81.
Duong MT, Rauschecker AM, Rudie JD, Chen PH, Cook TS, Bryan RN, Mohan S. Artificial intelligence for precision education in radiology. Br J Radiol. 2019 Nov; 92(1103):20190389.
Duong MT, Rudie JD, Wang J, Xie L, Mohan S, Gee JC, Rauschecker AM. Convolutional Neural Network for Automated FLAIR Lesion Segmentation on Clinical Brain MR Imaging. AJNR Am J Neuroradiol. 2019 08; 40(8):1282-1290.
Rudie JD, Mattay RR, Schindler M, Steingall S, Cook TS, Loevner LA, Schnall MD, Mamourian AC, Bilello M. An Initiative to Reduce Unnecessary Gadolinium-Based Contrast in Multiple Sclerosis Patients. J Am Coll Radiol. 2019 Sep; 16(9 Pt A):1158-1164.
Langlotz CP, Allen B, Erickson BJ, Kalpathy-Cramer J, Bigelow K, Cook TS, Flanders AE, Lungren MP, Mendelson DS, Rudie JD, Wang G, Kandarpa K. A Roadmap for Foundational Research on Artificial Intelligence in Medical Imaging: From the 2018 NIH/RSNA/ACR/The Academy Workshop. Radiology. 2019 06; 291(3):781-791.
Rudie JD, Rauschecker AM, Bryan RN, Davatzikos C, Mohan S. Emerging Applications of Artificial Intelligence in Neuro-Oncology. Radiology. 2019 03; 290(3):607-618.
Rudie JD, Rauschecker AM, Nabavizadeh SA, Mohan S. Neuroimaging of Dilated Perivascular Spaces: From Benign and Pathologic Causes to Mimics. J Neuroimaging. 2018 03; 28(2):139-149.
Rudie JD, Colby JB, Salamon N. Machine learning classification of mesial temporal sclerosis in epilepsy patients. Epilepsy Res. 2015 Nov; 117:63-9.
Sherman LE, Rudie JD, Pfeifer JH, Masten CL, McNealy K, Dapretto M. Development of the default mode and central executive networks across early adolescence: a longitudinal study. Dev Cogn Neurosci. 2014 Oct; 10:148-59.
Hernandez LM, Rudie JD, Green SA, Bookheimer S, Dapretto M. Neural signatures of autism spectrum disorders: insights into brain network dynamics. Neuropsychopharmacology. 2015 Jan; 40(1):171-89.
Rudie JD, Dapretto M. Convergent evidence of brain overconnectivity in children with autism? Cell Rep. 2013 Nov 14; 5(3):565-6.
Green SA, Rudie JD, Colich NL, Wood JJ, Shirinyan D, Hernandez L, Tottenham N, Dapretto M, Bookheimer SY. Overreactive brain responses to sensory stimuli in youth with autism spectrum disorders. J Am Acad Child Adolesc Psychiatry. 2013 Nov; 52(11):1158-72.
Di Martino A, Yan CG, Li Q, Denio E, Castellanos FX, Alaerts K, Anderson JS, Assaf M, Bookheimer SY, Dapretto M, Deen B, Delmonte S, Dinstein I, Ertl-Wagner B, Fair DA, Gallagher L, Kennedy DP, Keown CL, Keysers C, Lainhart JE, Lord C, Luna B, Menon V, Minshew NJ, Monk CS, Mueller S, Müller RA, Nebel MB, Nigg JT, O'Hearn K, Pelphrey KA, Peltier SJ, Rudie JD, Sunaert S, Thioux M, Tyszka JM, Uddin LQ, Verhoeven JS, Wenderoth N, Wiggins JL, Mostofsky SH, Milham MP. The autism brain imaging data exchange: towards a large-scale evaluation of the intrinsic brain architecture in autism. Mol Psychiatry. 2014 Jun; 19(6):659-67.
Pfeifer JH, Merchant JS, Colich NL, Hernandez LM, Rudie JD, Dapretto M. Neural and behavioral responses during self-evaluative processes differ in youth with and without autism. J Autism Dev Disord. 2013 Feb; 43(2):272-85.
Brown JA, Rudie JD, Bandrowski A, Van Horn JD, Bookheimer SY. The UCLA multimodal connectivity database: a web-based platform for brain connectivity matrix sharing and analysis. Front Neuroinform. 2012; 6:28.
Rudie JD, Brown JA, Beck-Pancer D, Hernandez LM, Dennis EL, Thompson PM, Bookheimer SY, Dapretto M. Altered functional and structural brain network organization in autism. Neuroimage Clin. 2012; 2:79-94.
Rudie JD, Hernandez LM, Brown JA, Beck-Pancer D, Colich NL, Gorrindo P, Thompson PM, Geschwind DH, Bookheimer SY, Levitt P, Dapretto M. Autism-associated promoter variant in MET impacts functional and structural brain networks. Neuron. 2012 Sep 06; 75(5):904-15.
Colby JB, Rudie JD, Brown JA, Douglas PK, Cohen MS, Shehzad Z. Insights into multimodal imaging classification of ADHD. Front Syst Neurosci. 2012; 6:59.
Vizueta N, Rudie JD, Townsend JD, Torrisi S, Moody TD, Bookheimer SY, Altshuler LL. Regional fMRI hypoactivation and altered functional connectivity during emotion processing in nonmedicated depressed patients with bipolar II disorder. Am J Psychiatry. 2012 Aug; 169(8):831-40.
Roussotte FF, Rudie JD, Smith L, O'Connor MJ, Bookheimer SY, Narr KL, Sowell ER. Frontostriatal connectivity in children during working memory and the effects of prenatal methamphetamine, alcohol, and polydrug exposure. Dev Neurosci. 2012; 34(1):43-57.
Colich NL, Wang AT, Rudie JD, Hernandez LM, Bookheimer SY, Dapretto M. Atypical Neural Processing of Ironic and Sincere Remarks in Children and Adolescents with Autism Spectrum Disorders. Metaphor Symb. 2012; 27(1):70-92.
Rudie JD, Shehzad Z, Hernandez LM, Colich NL, Bookheimer SY, Iacoboni M, Dapretto M. Reduced functional integration and segregation of distributed neural systems underlying social and emotional information processing in autism spectrum disorders. Cereb Cortex. 2012 May; 22(5):1025-37.
Masten CL, Colich NL, Rudie JD, Bookheimer SY, Eisenberger NI, Dapretto M. An fMRI investigation of responses to peer rejection in adolescents with autism spectrum disorders. Dev Cogn Neurosci. 2011 Jul; 1(3):260-70.
Dennis EL, Jahanshad N, Rudie JD, Brown JA, Johnson K, McMahon KL, de Zubicaray GI, Montgomery G, Martin NG, Wright MJ, Bookheimer SY, Dapretto M, Toga AW, Thompson PM. Altered structural brain connectivity in healthy carriers of the autism risk gene, CNTNAP2. Brain Connect. 2011; 1(6):447-59.
Scott-Van Zeeland AA, Abrahams BS, Alvarez-Retuerto AI, Sonnenblick LI, Rudie JD, Ghahremani D, Mumford JA, Poldrack RA, Dapretto M, Geschwind DH, Bookheimer SY. Altered functional connectivity in frontal lobe circuits is associated with variation in the autism risk gene CNTNAP2. Sci Transl Med. 2010 Nov 03; 2(56):56ra80.
Sanderson PM, Tosh N, Philp S, Rudie J, Watson MO, Russell WJ. The effects of ambient music on simulated anaesthesia monitoring. Anaesthesia. 2005 Nov; 60(11):1073-8.