Biomedical Image Computing Group · University of California San Francisco
phone: (415) 476 5377 · email: piotr.habas .a_t. ucsf.edu · radiology.ucsf.edu/bicg/habas
Selected publications
Peer-reviewed journal articles
- PA Habas, K Kim, F Rousseau, OA Glenn, AJ Barkovich, and C Studholme, "Atlas-based segmentation of developing tissues in the human brain with quantitative validation in young fetuses," Human Brain Mapping, in press.
- K Kim, PA Habas, F Rousseau, OA Glenn, AJ Barkovich, and C Studholme, "Intersection-based motion correction of multi-slice MRI for 3D in utero fetal brain image formation," IEEE Trans. Med. Imaging, in press.
- MA Mazurowski, PA Habas, JM Zurada, JY Lo, JA Baker, and GD Tourassi, "Training neural network classifiers for medical decision making: the effects of imbalanced datasets on classification performance," Neural Networks, vol. 21, no. 2-3, pp. 427-436, 2008.
- MA Mazurowski, PA Habas, JM Zurada, and GD Tourassi, "Decision optimization of case-based computer aided decision systems using genetic algorithms with application to mammography," Physics in Medicine and Biology, vol. 53, no. 4, pp. 895-908, 2008. [selected for Highlights of 2008] [see also "CAD weighs up its own evidence" on medicalphysicsweb.org]
- PA Habas, JM Zurada, AS Elmaghraby, and GD Tourassi, "Reliability analysis framework for computer-assisted medical decision systems," Medical Physics, vol. 34, no. 2, pp. 763-772, 2007.
Full conference papers
- K Kim, PA Habas, F Rousseau, OA Glenn, AJ Barkovich and C Studholme, "Reconstruction of a geometrically correct diffusion tensor image of a moving human fetal brain," in Medical Imaging 2010: Image Processing, accepted.
- PA Habas, K Kim, F Rousseau, OA Glenn, AJ Barkovich, and C Studholme, "A spatio-temporal atlas of the human fetal brain with application to tissue segmentation," in Medical Image Computing and Computer-Assisted Intervention, LNCS, vol. 5761, part I, pp. 289-296, 2009.
- PA Habas, K Kim, D Chandramohan, F Rousseau, OA Glenn, and C Studholme, "Statistical model of laminar structure for atlas-based segmentation of the fetal brain from in-utero MR images," in Medical Imaging: Image Processing, Proc. SPIE, vol. 7259, 725917, 2009.
- PA Habas, K Kim, F Rousseau, OA Glenn, AJ Barkovich, and C Studholme, "Atlas-based segmentation of the germinal matrix from in-utero clinical MRI of the fetal brain," in Medical Image Computing and Computer-Assisted Intervention, LNCS, vol. 5241, part I, pp. 351-358, 2008.
- K Kim, MF Hansen, PA Habas, F Rousseau, OA Glenn, AJ Barkovich, and C Studholme, "Intersection-based registration of slice stacks to form 3D images of the human fetal brain," in Proc. 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 1167-1170, 2008.
Short conference abstracts
- PA Habas, K Kim, CE Rodriguez-Carranza, OA Glenn, AJ Barkovich, and C Studholme, "Abnormal sulcal formation in fetuses with ventriculomegaly identified by surface curvature mapping from motion-corrected clinical MRI," 15th Annual Meeting of the Organization for Human Brain Mapping, San Francisco, CA, June 2009.
- D Chandramohan, PA Habas, K Kim, OA Glenn, AJ Barkovich, and C Studholme, "Cortical thickness mapping of the human fetal brain in utero from motion-corrected clinical MRI: preliminary results," 15th Annual Meeting of the Organization for Human Brain Mapping, San Francisco, CA, June 2009.
- PA Habas, K Kim, F Rousseau, OA Glenn, AJ Barkovich, and C Studholme, "Atlas-based segmentation of the fetal brain from reconstructed 3D clinical MRI: Quantitative validation in young fetuses," 15th Annual Meeting of the Organization for Human Brain Mapping, San Francisco, CA, June 2009.
- K Kim, PA Habas, F Rousseau, OA Glenn, AJ Barkovich, and C Studholme, "Evaluation of clinical fetal brain MRI motion correction for 3D image formation," 15th Annual Meeting of the Organization for Human Brain Mapping, San Francisco, CA, June 2009.
Professional service
Journals
- IEEE Transactions on Medical Imaging - reviewer
- Medical Physics - associate editor (ad hoc), reviewer
- Physics in Medicine and Biology - reviewer
- Neurocomputing - reviewer
Conferences
- MICCAI Workshop on Image Analysis of the Developing Brain - program committee
- IEEE Congress on Evolutionary Computation (IEEE CEC 2009) - program committee
- International Joint Conference on Neural Networks (IJCNN 2007) - technical committee
- IEEE Congress on Evolutionary Computation (IEEE CEC 2007) - international program committee
